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#ImageAnalysis

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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...

I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.

To avoid a massive OpenCV dependency for a current project I'm involved in, I ended up porting my own homemade, naive optical flow code from 2008 and just released it as a new package. Originally this was written for a gestural UI system for Nokia retail stores (prior to the Microsoft takeover), the package readme contains another short video showing the flow field being utilized to rotate a 3D cube:

thi.ng/pixel-flow

I've also created a small new example project for testing with either webcam or videos:

demo.thi.ng/umbrella/optical-f

📣 Listen up: you only have a few more days to apply for #EMBOSpatialOmics!

Would you like to get a comprehensive introduction to the various methods of spatial-omics and in particular those of multiplex immunofluorescence and spatial transcriptomics?

Then apply for this hands-on EMBO Practical Course by 10 March ✍️

🌍 EMBL Heidelberg
📅 15 – 20 June 2025
💻 s.embl.org/iso25-01-ma

I left the other place in one of the early big migrations, but I'm delighted that my employer has also followed suit:

bsky.app/profile/visiopharm.bs

If you're over there and want to see what the company is doing in the #DigitalPathology #DeepLearning #ImageAnalysis space, check it out ... or say hello and ask me :)

Bluesky SocialVisiopharm (@visiopharm.bsky.social)Visiopharm® is a world leader in AI-driven digital precision pathology software.